/* * [CSVReshape.java] * * Summary: reshape a CSV file reordering, duplicating or removing fields. * * Copyright: (c) 2010-2017 Roedy Green, Canadian Mind Products, http://mindprod.com * * Licence: This software may be copied and used freely for any purpose but military. * http://mindprod.com/contact/nonmil.html * * Requires: JDK 1.8+ * * Created with: JetBrains IntelliJ IDEA IDE http://www.jetbrains.com/idea/ * * Version History: * 3.5 2010-12-11 add CSVReshape initial version * 3.6 2011-01-25 allow you to specify encoding * 3.7 2011-02-17 now reorders the lead ## label comment, and leaves embedded col0 comments untouched. */ package com.mindprod.csv; import com.mindprod.common18.EIO; import com.mindprod.fastcat.FastCat; import com.mindprod.hunkio.HunkIO; import java.io.EOFException; import java.io.File; import java.io.IOException; import java.io.PrintWriter; import java.nio.charset.Charset; import java.util.regex.Pattern; import static java.lang.System.*; /** * reshape a CSV file reordering, duplicating or removing fields. *

* Use: java.exe com.mindprod.CSVReshape somefile.csv 0 3 1 1 * (0-based column numbers desired in output, if column in out past the end, will be empty) * * @author Roedy Green, Canadian Mind Products * @version 3.7 2011-02-17 now reorders the lead ## label comment, and leaves embedded col0 comments untouched. * @since 2010-12-11 */ public final class CSVReshape { /** * how to use the command line */ private static final String USAGE = "\nCSVReshape needs a single filename.csv on the command line followed by " + "0-based numeric columns desired."; /** * used to split Label comment fields apart */ private static final Pattern SPLIT_ON_COMMA = Pattern.compile( "\\s*,\\s*" ); /** * Reshape a CSV file, constructor. Just create the CSVReshape object.. There are no methods to call. * * @param fileBeingProcessed CSV file to be packed to remove excess space and quotes. * @param separatorChar field separator character, usually ',' in North America, * ';' in Europe and sometimes '\t' for * tab. * @param quoteChar char to use to enclose fields containing a separator, usually '\"'. Use (char)0 if * you don't want a quote character. * @param commentChar char to use to introduce comments. Use (char) 0 if none. Only one character allowed. * @param encoding encoding of input and output. * @param colsWanted list of columns wanted in the output file in order. * * @throws java.io.IOException if problems reading/writing file */ @SuppressWarnings( { "WeakerAccess" } ) public CSVReshape( final File fileBeingProcessed, final char separatorChar, final char quoteChar, final char commentChar, final Charset encoding, final int... colsWanted ) throws IOException { final String commentChars = ( commentChar == 0 ) ? "" : String.valueOf( commentChar ); // reader, separatorChar, quoteChar, commentChars, hideComments, trimQuoted, trimUnquoted, // allowMultipleLineFields final CSVReader r = new CSVReader( EIO.getBufferedReader( fileBeingProcessed, 64 * 1024, encoding ), separatorChar, quoteChar, commentChars, false, true /* trimQuoted */, true /* trimUnquoted */, true ); final File tempFile = HunkIO.createTempFile( "temp_", ".tmp", fileBeingProcessed ); // writer, quoteLevel, separatorChar, quoteChar, commentChar, trim final PrintWriter pw = EIO.getPrintWriter( tempFile, 32 * 1024, encoding ); final CSVWriter w = new CSVWriter( pw, 0 /* minimal */, separatorChar, quoteChar, commentChar, true ); try { while ( true ) { // process one line each time through the loop. final String[] fields = r.getAllFieldsInLine(); final int fieldCount; final String comment; if ( r.wasComment() ) { // don't count the comment as a field fieldCount = fields.length - 1; // col 0 or tail comment. // comment was last, and possibly only field on line. if ( r.wasLabelComment() ) { // reorder ## label comment, usually first in file. comment = rebuildLabelComment( fields[ fieldCount ], colsWanted ); } else { comment = fields[ fieldCount ]; } } else { fieldCount = fields.length; comment = null; } // output the the fields in desired order. for ( int source : colsWanted ) { if ( source >= fieldCount ) { if ( fieldCount > 0 ) { // don't bother with dummy fields for an empty or pure comment line. w.put( "" ); // request was off past the end. } } else { w.put( fields[ source ] ); // was actual data field available. } } // fields copied, now tack on comment, no matter what column it is r. if ( comment != null ) { w.nl( comment ); } else { w.nl(); } } // end while } catch ( EOFException e ) { out.println( r.lineCount() + " lines reshaped." ); r.close(); w.close(); HunkIO.deleteAndRename( tempFile, fileBeingProcessed ); } } /** * comment has two lead comment chars, one stripped off, and are used to label the fields. * Reshape it so it labels the new fields. * * @param comment field names separated by commas, with lead comment char. * * @return reordered comment */ private static String rebuildLabelComment( String comment, int[] colsWanted ) { final String[] fieldnames = SPLIT_ON_COMMA.split( comment.substring( 1 ) ); // strip second # final int labelledFieldnameCount = fieldnames.length; final FastCat sb = new FastCat( colsWanted.length * 2 + 2 ); sb.append( comment.charAt( 0 ) ); // rebuild just second # sb.append( ' ' ); for ( int source : colsWanted ) { if ( source < labelledFieldnameCount ) { sb.append( fieldnames[ source ].trim() ); sb.append( ", " ); } // don't put dummy field for unlabelled tail fields. } sb.drop(); return sb.toString(); } /** * Simple command line interface to Reshape. Reshapes one csv file whose name is on the command line. Must have * extension .csv
Use java com.mindprod.CSVReshape somefile.csv 0 1 2 3 ... * Output replaces input. If you want the input, make a copy first. * * @param args name of csv file to reshape, followed by zero-based cols wanted in desired order. */ public static void main( final String[] args ) { if ( args.length < 2 ) { throw new IllegalArgumentException( USAGE ); } final String filename = args[ 0 ]; if ( !filename.endsWith( ".csv" ) ) { throw new IllegalArgumentException( "Bad Extension\n" + USAGE ); } final File file = new File( filename ); final int[] colsWanted = new int[ args.length - 1 ]; try { for ( int i = 1; i < args.length; i++ ) { colsWanted[ i - 1 ] = Integer.parseInt( args[ i ] ); } } catch ( NumberFormatException e ) { throw new IllegalArgumentException( USAGE ); } try { // file, separatorChar, quoteChar, commentChar new CSVReshape( file, ',', '\"', '#', CSV.UTF8, colsWanted ); } catch ( IOException e ) { err.println(); e.printStackTrace( err ); err.println( "CSVReshape failed to reshape " + EIO.getCanOrAbsPath( file ) ); err.println(); } } // end main }